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In addition, in order to allow users to understand what has changed and to ensure orderly development you have to describe your changes. Short URL to this thread: https://techguy.org/288459 Log in with Facebook Log in with Twitter Log in with Google Your name or email address: Do you already have an account? Thanks to Mamoru Yamanishi for contributing the improved fontset logic. Why can't I see my data files in Classic under Mac OS X?

Masullo and C. Thread Status: Not open for further replies. Note: that RasMol must be configured with EIGHTBIT for 1bit/pixel (monochrome) or 8bit/pixel displays, with SIXTEENBIT for 16bit/pixel displays and with THIRTYTWOBIT for either 24bit/pixel or 32bit/pixel displays. --RS In pactice You are not logged in.

In May 1997, William McClure of Carnegie Mellon University reorganized the HTML version of the manual into multiple sections which could be downloaded quickly and added use of frames. Select New Type.... Other copyrights apply. The Archimedes distribution is available at the following sites: HENSA (difficult to reach for users from outside the UK): micros.hensa.ac.uk (in /micros/arch/riscos/e/e089/rasmol.arc), the University of Kaiserlautern (Germany): ftp.uni-kl.de (in /pub/acorn/long/science/chemistry/rasmol.arc), and

Place any system wide initialisation parameters into the file "rasmolrc" in the directory pointed to by RASMOLPATH. An attempt to fix some of the chirality reversals in some of the output modes. Now, the Start, Programs menu will have RasWin on its list. If this proves to be a nuisance, please contact [email protected] What are the definitive literature citations for RasMol?

Updates to the rasmol_install.sh and rasmol_run.sh scripts to support Chinese and Japanese using cxterm. Pros This software is free. Eric Martz's site www.umass.edu/microbio/rasmol/ is focused on Protein Explorer and Chime. Bernstein Contents What is this document?

Back to contents of this document. The following more general instructions adapted from the RasMol v2.6 release are provided for your information, but have _not_ been tested against RasMol_2.7.3: MS Windows v3.1: Use Makefile.pc instead of Makefile, Note: Patches to command.c were included to fix the handling of load inline in the UCB multiple molecule environment. RasTop is a GUI front end for RasWin.

Select New.... Messages and menus in Bulgarian, Chinese, English, Italian, Japanese, Russian and Spanish are now supported on systems with appropriate fonts. The first is to use "set picking monitors", similar to set picking distance above. In RasMol versions prior to v2.6, you'd have to type an atom expression of the form "select 1-25 and **a" where the final term is a primitive expression.

Bernstein, 21 January 2001 RasMol 2.7.2 Features The preliminary release of RasMol 2.7.2, made the following changes to RasMol 2.7.1: Incorporation of some of the code from the UCB RasMol variants. Recompiling RasMol v2.7.3 For both Windows and Mac, this version has been built with MetroWerks CodeWarrior, and the necessary projects are included in the src/mswin and src/mac directories. Code to represent bonds in and to alternate conformers with a narrowed portion in the middle of each bond. This patch corrects the display of negative torsion angles caused by use of the unsigned short type, and correctys imprecise distance and angle displays.

IMPORTANT NOTE:Future releases of RasMol will continue to offer the GPL and RASLIC as alternative licenses for the source code, but, in order to conform to the license conditions of various Support for maps. This is the main repository for all of the world's known 3D xray-crystallography and nuclear magnetic resonance (NMR) structures of proteins and nucleic acids. THIS IS A PRELIMINARY RELEASE INVOLVING EXTENSIVE MODIFICATIONS ***** USE WITH CAUTION ****** IMPORTANT This version is based in directly on RasMol version, on RasMol version 2.7.2, on RasMol version

Copy all the files from the "src/vms" directory to the source directory. Monitors can also be added from the command line using the monitor command. How do I select residues in a particular chain?

If that project file is not satisfactory, for the Metrowerks 68K Compiler add the libraries "MacOS.lib" and "ANSI (2i) C.68K.Lib" to the project. [Note: If compiling for 4byte integer size and/or

The "Frequently Asked Questions" (FAQ) document for OpenRasMol is derived in part from two FAQs posted to the web by Eric Martz at http://www.umass.edu/microbio/rasmol/faq.htm, one FAQ by Roger Sayle, and one These on-line help files are only up to date with version 2.5.) Now, in Windows, select File, New (Program Item), Browse, and select C:\RASWIN\RASWIN.EXE (or RASWIN32.EXE), OK. The "RasMol Command Line" icon appears at the bottom of the screen on the Windows background. Provided by the RasMol enhancement project at the MultiCHEM Facility at the University of California, Berkeley.

Fixes to the centring logic. Printing under windows is not working for many modern systems. Portions of the 2.7.1 version of the RasMol manual were derived with permission from William McClure's version using Roger Sayle's rasmol.doc for ?version 2.6.4 as the primary source. National Science Foundation and the U.S.

It is possible to set-up RASMOLPATH and RASMOLPDBPATH each time the program is running by renaming rasmol to rasmol.exe, and using a script similar to the one in "rasmol.sh" of the Rasmol Home Page Rasmol for Mac Rasmol for PC Rasmol for SGI Rasmol for Mac Download the file: RasMac26.sit.hqx The folder Rasmol v2.6 should extract itself automatically into your download folder. By default, this option is disabled. Why are there such long headers on these web pages? We regret the necessity for the long headers.

Liotto provided Italian translation of menus and messages in March 2001. Compile RasMol using the "Build Application..." Menu Item. Clarification to the install instructions for 64-bit unix systems. RasMol can read a prepared list of commands from a 'script' file (or via inter-process communication) to allow a given image or viewpoint to be restored quickly.

SOCKETS This directive enables the TCP/IP server functionality of RasMol to be enable. This should be undefined on machines not supporting BSD-style TCP/IP sockets (such as VMS). This primitive expression is a wildcarded form of the form "cys37a" where the residue name and number are replaced by the wildcard "*". Thanks to Jan Reichert jr@imb-jena.de for pointing out these problems.

RasMol is an important scientific tool for visualisation of molecules created by Roger Sayle in 1992. A few systems are missing an updated version of the mfc42.dll file which is also available, but requires separate installation. RasTop offers a user-friendly graphical interface around "RasMol molecular engine". Under Mime SubType, type x-rasmol.

The exception to the above rule is images produced in Vector Postscript format using the "write vectps" command. The GNU project, and the Linux project have shown that an open source approach works. If you have specific questions be sure to check RasMol's built-in help, both from the Help menu, and from the command-line (help command in the command-line window). (Note that RasMol's built-in Version 2.7 has been made available recently and is especially recommended for experienced users and those who need its enhancements.